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revision 1.2, Tue Jul 11 18:15:43 2017 UTC revision 1.3, Wed Jul 19 01:18:20 2017 UTC
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28  =head1 Annotate a Genome Using RAST  =head1 Annotate a Genome Using RAST
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30      p3-rast.pl [ options ] genomeID name      p3-rast.pl [ options ] taxonID name
31    
32  This script invokes the RAST service over the web to annotate a genome. It will submit a FASTA  This script invokes the RAST service over the web to annotate a genome. It will submit a FASTA
33  file to RAST, wait for the job to finish, and then format the results into a JSON-form L<GenomeTypeObject>.  file to RAST, wait for the job to finish, and then format the results into a JSON-form L<GenomeTypeObject>.
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35  =head2 Parameters  =head2 Parameters
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37  The input can be a contig-only GenomeTypeObject in JSON format or a contig FASTA file. The  The input can be a contig-only GenomeTypeObject in JSON format or a contig FASTA file. The
38  two positional parameters are the genome ID and the genome name. The command-line options in  two positional parameters are the proposed taxonomic ID and the genome name. The command-line options in
39  L<P3Utils/ih_options> are used to specify the standard input. The additional command-line  L<P3Utils/ih_options> are used to specify the standard input. The additional command-line
40  options are as follows.  options are as follows.
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