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revision 1.1, Tue Jul 11 18:15:43 2017 UTC revision 1.3, Fri Mar 16 01:24:56 2018 UTC
# Line 44  Line 44 
44    
45  There are no positional parameters.  There are no positional parameters.
46    
47  The standard input can be overwritten using the options in L<P3Utils/ih_options>.  The standard input can be overriddn using the options in L<P3Utils/ih_options>.
48    
49  Additional command-line options are  Additional command-line options are
50    
# Line 76  Line 76 
76    
77  =back  =back
78    
79    =head3 Example
80    
81    This command is shown in the tutorial p3_common_tasks.html
82    
83    p3-get-genome-features --eq feature_type,CDS --attr sequence_id --attr location --attr product &lt;genomes.tbl | p3-function-to-role | p3-generate-close-roles
84        role1   role2   count
85        Transposase, IS3/IS911 family   Mobile element protein  33
86        Mobile element protein  Mobile element protein  29
87        Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)   Copper-translocating P-type ATPase (EC 3.6.3.4) 25
88        Potassium efflux system KefA protein    Small-conductance mechanosensitive channel  13
89        ...
90    
91  =cut  =cut
92    
93  use strict;  use strict;

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