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Revision 1.4 - (download) (as text) (annotate)
Mon Dec 5 18:56:37 2005 UTC (14 years, 2 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, caBIG-05Apr06-00, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, caBIG-13Feb06-00, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.3: +17 -0 lines
Add license words.

# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
# This file is part of the SEED Toolkit.
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.

use FIG;
use P2P;
use Date::Parse;
use Time::Local;
use strict;
use Getopt::Long;

# Initiate a synchronization from the given remote host.
# Usage: p2p_sync_from_remote base-url-of-target date

my $skip_tough = 0;
my $html_file;
my $log_file = "p2p.log";
my $cred_file;

my $opt_ok = GetOptions("skip-tough" => \$skip_tough,
			"credentials=s" => \$cred_file,
			"html=s" => \$html_file,
		        "log|l=s" => \$log_file);
if (!$opt_ok or @ARGV < 2)
    die <<EOD;
Usage: $0 [--skip-tough] [--html htmlfile] [--log logfile] [--credentials cred-file] target-seed-url date-specficiation
target-seed-url should be of the form 'http://host/FIG".

my $peer_base = shift @ARGV;
my $date = join(" ", @ARGV);

my $update_from;

# If the date is passed as an integer, interpret it as a time-since-the-epoch and
# do not attempt to parse.

if ($date =~ /^\d+$/)
    $update_from = $date;
    $update_from = str2time($date);

if (!defined($update_from))
    die "Cannot parse date \"$date\"\n";

if ($peer_base !~ m,http://.*/FIG/?,)
    die "Target url \"$peer_base\" appears to be malformed.\n";

my $creds = [];

if ($cred_file)
    my $fh;
    open($fh, "<$cred_file") or die "Cannot open credentials $cred_file: $!\n";

    my $netloc = <$fh>;
    my $realm = <$fh>;
    my $user = <$fh>;
    my $pw = <$fh>;

    if (!$pw)
	die "Incomplete credentials file $cred_file\n";


    push(@$creds, [$netloc, $realm, $user, $pw]);

print "Updating from $peer_base at " . localtime($update_from) . "\n";
printf " (skip_tough %s)\n", $skip_tough ? "enabled" : "disabled";
print "Writing logfile at $log_file\n";

my $fig = new FIG;
my $peer_id = 'peer';
my $peer_url = "$peer_base/p2p_service.cgi";

my $peer = P2P::Requestor->new($fig, $peer_url, $peer_id, undef, $creds);

my $update_to;

P2P::perform_update($fig, $peer, $update_from, $skip_tough, $update_to, $log_file, $html_file);

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