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Revision 1.1 - (download) (as text) (annotate)
Sat Jul 8 20:23:51 2006 UTC (13 years, 4 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
order_figfams

my $tmp1 = "$FIG_Config::temp/figfams.$$";
my $tmp2 = "$FIG_Config::temp/figfams.$$.S";
open(FIGFAMS,">$tmp1") || die "could not open $tmp1";
while (defined($_ = <STDIN>))
{
    if ($_ =~ /^(\S+)/)
    {
	$fam{$1}++;
	print FIGFAMS $_;
    }
}
close(FIGFAMS);

@fams = sort { $fam{$b} <=> $fam{$a} } keys(%fam);


for ($i=1; ($fam = shift @fams); $i++)
{
    $n{$fam} = $i;
}

open(FIGFAMS,"<$tmp1") || die "could not open $tmp1";
open(SORTED,"| sort > $tmp2") || die "could not open $tmp2";
while (defined($_ = <FIGFAMS>))
{
    if ($_ =~ /^(\S+)\t(\S.*\S)/)
    {
	$fam = $1;
	$rest = $2;
	$n = $n{$fam};
	print SORTED join("\t",("FIG" . ("0" x (6 - length($n))) . $n,$rest)),"\n";
    }
}
close(FIGFAMS);
close(SORTED);
open(SORTED,"<$tmp2") || die "could not open $tmp2";
while (defined($_ = <SORTED>))
{
    print $_;
}
close(SORTED);
unlink($tmp1,$tmp2);



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