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Revision 1.7 - (download) (as text) (annotate)
Mon Dec 5 18:56:37 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, caBIG-05Apr06-00, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, caBIG-13Feb06-00, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.6: +17 -0 lines
Add license words.

#
# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
#


$usage = "usage: merge_translation_rules Existing Proposed From > Good ";

(($existing = shift @ARGV) &&
 ($proposed = shift @ARGV) &&
 ($who_from = shift @ARGV)
)
    || die $usage;

$trans = {};

open(LOG,">>$FIG_Config::global/translation.update.results.log")
    || die "could not open $FIG_Config::global/translation.update.results.log";

&load($existing,$trans,"mine",\*LOG);
&load($proposed,$trans,$who_from,\*LOG);
close(LOG);

foreach $from (sort keys(%$trans))
{
    $to = $trans->{$from};
    while ($trans->{$to})
    {
	print STDERR "$to => $trans->{$to}\n";
	$to = $trans->{$to};
    }
    if ($from ne $to)
    {
	print "$from\t$to\n";
    }
}

sub load {
    my($file,$trans,$who_from,$fh_log) = @_;

    open(TMP,"<$file") || return;
    while (defined($_ = <TMP>))
    {
	chop;
	($from,$to) = split(/\t/,$_);
	if ($trans->{$from} && ($trans->{$from} eq $to))
	{
#	    print STDERR "exists: $from => $to\n\n";
	}
	elsif ($trans->{$from} && ($trans->{$from} ne $to))
	{
	    print $fh_log "conflict\t$who_from\n$from\t$to\n$from\t$trans->{$from}\n\n";
	}
	elsif ($new = $trans->{$to})
	{
	    print $fh_log "target_gets_rewritten\t$who_from\n$from\t$to\n$to\t$new\n\n";
	}
	elsif ($from ne $to)
	{
	    $trans->{$from} = $to;
	}
    }
}


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