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Revision 1.1 - (download) (as text) (annotate)
Sun Jan 16 18:39:59 2011 UTC (9 years, 4 months ago) by redwards
Branch: MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, rast_rel_2014_0912, myrast_rel40, mgrast_dev_05262011, mgrast_dev_04082011, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, rast_rel_2014_0729, mgrast_dev_02212011, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2011_0119, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, myrast_33, rast_rel_2011_0928, mgrast_dev_04052011, mgrast_dev_02222011, mgrast_dev_10262011, HEAD
two phage specific scripts


# mark a genome as a phage. We basically set the virus_type attribute and add a PHAGE file

use strict;
use FIG;
my $fig=new FIG;

my $genome = shift || die "Genome ID?";
open(OUT, ">$FIG_Config::organisms/$genome/PHAGE") || die "can't touch file $FIG_Config::organisms/$genome/PHAGE";
print OUT "phage ",  $fig->genus_species($genome), "\n";
close OUT;

$fig->add_attribute($genome, "virus_type", "Phage");

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