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Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Apr 20 13:00:15 2008 UTC (11 years, 7 months ago) by overbeek
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.12: +4 -2 lines
Diff to previous 1.12
return empty list of failure to open FIFfam

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Feb 18 21:35:44 2008 UTC (11 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.11: +0 -2 lines
Diff to previous 1.11
undo bogus commit

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Feb 18 21:31:38 2008 UTC (11 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.10: +2 -0 lines
Diff to previous 1.10
*** empty log message ***

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 27 18:27:33 2007 UTC (12 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.9: +2 -0 lines
Diff to previous 1.9
add strip comments argument on function_of

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jul 22 13:15:44 2007 UTC (12 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +11 -1 lines
Diff to previous 1.8
allow user to set max size of alignments

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 17 16:44:11 2007 UTC (12 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.7: +1 -0 lines
Diff to previous 1.7
enhance message relating to tree-based annotation

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jul 1 16:22:17 2007 UTC (12 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +4 -1 lines
Diff to previous 1.6
minor fixes to FigFams to support FIGO

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jun 23 22:42:15 2007 UTC (12 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +10 -3 lines
Diff to previous 1.5
fixes to make_trimmed_alignment_from_ids

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jun 23 17:06:35 2007 UTC (12 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +1 -0 lines
Diff to previous 1.4
add use of gjoseqlib to make_trimmed_alignment_from_ids

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jun 10 20:23:37 2007 UTC (12 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +15 -7 lines
Diff to previous 1.3
pack core alignments in make_trimmed_alignment_from_ids

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 12 23:23:16 2007 UTC (12 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +22 -9 lines
Diff to previous 1.2
update to make_trimmed_alignment_from_ids

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 12 21:53:05 2007 UTC (12 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +7 -1 lines
Diff to previous 1.1
support verbose option when making alignments

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 12 21:22:23 2007 UTC (12 years, 6 months ago) by overbeek
Branch: MAIN
add make_trimmed_alignment_from_ids

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