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Revision 1.1 - (download) (as text) (annotate)
Fri Mar 7 20:06:02 2008 UTC (11 years, 8 months ago) by bartels
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
*** empty log message ***

#!/usr/bin/env /home/bartels/FIGdisk/env/cee/bin/perl


use FIG;
use Getopt::Std;

getopts ( 'd:f:' );

our ( $opt_d, $opt_f );

if ( !defined( $opt_d ) || !defined( $opt_f ) ) {
  die usage;
}
open ( OUT, ">$opt_f" ) or die "cannot open file $opt_f\n";

opendir ( DIR, $opt_d ) or die "Could not open $opt_dir\n";

while ( defined( $thisfile = readdir( DIR ) ) ) {
  if ( $thisfile =~ /(TIGR\d+)\.INFO/ ) {
    my $tfam = $1;
    print STDERR $tfam." TFAM\n";
    open ( F, $thisfile ) or die "cannot open $thisfile";
    while ( <F> ) {
      chomp;
      if ( $_ =~ /^IT\s+(.*)/ ) {
	print STDERR $1."\n";
	print OUT $tfam."\t$1\n";
      }
    }
    close F;
  }

}
close OUT;

sub usage {
  print STDERR "make_tf_equivalog_file -d <directory including INFO files> -f <output file>\n";
}

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