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Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Sep 21 12:06:16 2008 UTC (11 years, 2 months ago) by overbeek
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.13: +6 -1 lines
Diff to previous 1.13
do not use genomes with variants beginning with an asterisk in forming FIGfams based on subsystems

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 25 18:52:25 2008 UTC (11 years, 2 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_rel_2008_0917, mgrast_rel_2008_0919
Changes since 1.12: +2 -2 lines
Diff to previous 1.12
only nonaux roles

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jan 5 15:35:52 2008 UTC (11 years, 10 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_rel_2008_0806, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07
Changes since 1.11: +5 -6 lines
Diff to previous 1.11
additions to FIGfam maintenance

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Dec 30 12:21:48 2007 UTC (11 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.10: +2 -2 lines
Diff to previous 1.10
do not check for frameshifts in computing subsystem-based FIGfams

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 29 19:32:00 2007 UTC (11 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.9: +0 -4 lines
Diff to previous 1.9
remove duplication of code

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 29 19:03:18 2007 UTC (11 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +8 -1 lines
Diff to previous 1.8
make_subsys_based_families should not allow truncations or frameshifts

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 27 18:27:33 2007 UTC (12 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.7: +1 -1 lines
Diff to previous 1.7
add strip comments argument on function_of

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 23 19:15:40 2007 UTC (12 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.6: +2 -2 lines
Diff to previous 1.6
compute_pchs_from_sims.pl

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Feb 18 14:10:45 2007 UTC (12 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +10 -5 lines
Diff to previous 1.5
ignore vc of 0 or -1 when making Figfams from subsystems

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 12 20:36:45 2006 UTC (13 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +1 -1 lines
Diff to previous 1.4
usable_sub => usable_subsystem

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 12 20:25:50 2006 UTC (13 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +1 -7 lines
Diff to previous 1.3
minor changes to eliminate master:

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 23 17:39:11 2006 UTC (13 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +8 -1 lines
Diff to previous 1.2
minor tools

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Feb 19 20:36:33 2006 UTC (13 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +6 -2 lines
Diff to previous 1.1
minor fix to suppress bad cell entries in make_subsys_based_families

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Feb 19 20:19:16 2006 UTC (13 years, 9 months ago) by overbeek
Branch: MAIN
put code for making protein families in correct directory

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