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Revision 1.2 - (download) (as text) (annotate)
Mon Dec 5 18:56:37 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, caBIG-05Apr06-00, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, caBIG-13Feb06-00, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.1: +17 -0 lines
Add license words.

# -*- perl -*-
#
# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
#


use Carp;
use Data::Dumper;

$usage = "make_sp_desc_with_org [Label (Def: sp)] < sp.dat > sp.desc";

($label = shift @ARGV) || ($label = "sp");

$| = 1;

$_ = <STDIN>;
while ($_)
{
    if ($_ =~ /^ID\s+(\S+)/)
    {
	$id = $1;
	$_ = <STDIN>;
    }
    elsif ($_ =~ /^AC\s+(\S.*\S)/)
    {
	$acs = $1;
	$acs =~ s/;\s*$//;
	push(@acs,split(/; /,$acs));
	$_ = <STDIN>;
    }
    elsif ($_ =~ /^OS\s+(\S.*\S)\s*$/)
    {
	$os = $1;
	while (defined($_ = <STDIN>) && ($_ =~ /^OS\s+(\S.*\S)\s*$/))
	{
	    $os .= " $1";
	}
    }
    elsif ($_ =~ /^DE\s+(\S.*\S)\s*$/)
    {
	$de = $1;
	while (defined($_ = <STDIN>) && ($_ =~ /^DE\s+(\S.*\S)\s*$/))
	{
	    $de .= " $1";
	}
    }
    elsif ($_ =~ /\/\//)
    {
	if ($id && (@acs > 0) && $de)
	{
	    foreach $ac (@acs)
	    {
		$line = "$label\|$ac\t$de";
		if ($os)
		{
		    $line .= " \[$os\]";
		}
		print "$line\n";
	    }
	}
	$id = ""; $ac = ""; $de = ""; $os = ""; @acs = ();
	$_ = <STDIN>;
    }
    else
    {
	$_ = <STDIN>;
    }
}

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