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Revision 1.1 - (download) (as text) (annotate)
Thu Jan 29 20:24:13 2009 UTC (10 years, 9 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, myrast_rel40, mgrast_dev_05262011, mgrast_dev_04082011, rast_rel_2010_0928, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, rast_rel_2009_07_09, rast_rel_2010_0827, myrast_33, rast_rel_2011_0928, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, HEAD
additions to support partitioning of sims

use SeedSims;

use FIG;
my $fig = new FIG;

while (defined($_ = <STDIN>))
{
    if ($_ =~ /^(\S+)\t(\S+)\t(\S+)/)
    {
	my $id1 = $1;
	my $id2 = $2;
	my $sc  = $3;

	my $ss1 = &to_sc($fig,$id1);
	my $ss2 = &to_sc($fig,$id2);
	if ($ss1 && $ss2 && ($ss1 != $ss2))
	{
	    print join("\t",sort { $a <=> $b } ($ss1,$ss2)),"\n";
	}
    }
}

sub to_sc {
    my($fig,$peg) = @_;

    my $md5 = $fig->md5_of_peg($peg);
    my $ss  = &SeedSims::md5_to_sim_set($md5);
    return $ss;
}

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