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Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 11 19:26:04 2010 UTC (9 years, 11 months ago) by dejongh
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, myrast_33, myrast_rel40, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928
Changes since 1.16: +2 -1 lines
Diff to previous 1.16
Fix KEGG location

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 20 22:01:58 2009 UTC (10 years, 10 months ago) by golsen
Branch: MAIN
CVS Tags: rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118
Changes since 1.15: +6 -1 lines
Diff to previous 1.15
The old sort syntax does not work on the latest Mac OS 10.5.  Converted the
sort.

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Oct 23 16:57:13 2007 UTC (12 years, 4 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_release_2008_09_29
Changes since 1.14: +3 -1 lines
Diff to previous 1.14
disable attribute indexing.

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Oct 23 15:15:28 2007 UTC (12 years, 4 months ago) by olson
Branch: MAIN
Changes since 1.13: +14 -3 lines
Diff to previous 1.13
Begin support for split peg.index.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 22 20:06:00 2007 UTC (13 years, 1 month ago) by parrello
Branch: MAIN
Changes since 1.12: +330 -217 lines
Diff to previous 1.12
Changed to create glimpse data for attributes.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 18:56:37 2005 UTC (14 years, 2 months ago) by olson
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.11: +17 -0 lines
Diff to previous 1.11
Add license words.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Oct 6 00:35:11 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-00-00-00
Changes since 1.10: +3 -2 lines
Diff to previous 1.10
Use "$FIG_Config::temp" to sort aliases, instead of "/tmp/". -- /gdp

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 16 05:10:42 2005 UTC (14 years, 5 months ago) by mkubal
Branch: MAIN
CVS Tags: caBIG-dataload-0
Changes since 1.9: +3 -0 lines
Diff to previous 1.9
make phage and pi searchable

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 9 05:51:07 2005 UTC (14 years, 8 months ago) by parrello
Branch: MAIN
CVS Tags: Root-bobdev_news, merge-bobdev_news-1, merge-bobdev_news-2, merge-bodev_news-3, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2, merge-trunktag-bodev_news-3
Branch point for: Branch-bobdev_news
Changes since 1.8: +93 -98 lines
Diff to previous 1.8
*** empty log message ***

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Apr 9 01:57:56 2005 UTC (14 years, 10 months ago) by overbeek
Branch: MAIN
CVS Tags: efrank-preMakefileToStandardMk
Changes since 1.7: +20 -13 lines
Diff to previous 1.7
fix to make_indexes

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 8 17:12:45 2005 UTC (14 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +1 -1 lines
Diff to previous 1.6
fix to make_indexes

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 8 16:31:40 2005 UTC (14 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +56 -2 lines
Diff to previous 1.5
fixes to indexing to treat equiv seq as aliases

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jun 5 13:30:22 2004 UTC (15 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +1 -0 lines
Diff to previous 1.4
fix serious bug causing truncation of CDSs in parse_genbank

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 29 14:08:58 2004 UTC (15 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +8 -2 lines
Diff to previous 1.3
untested changes to extract_genomes

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 18 02:44:42 2004 UTC (15 years, 11 months ago) by gdpusch
Branch: MAIN
Changes since 1.2: +57 -6 lines
Diff to previous 1.2
Now skips indexing "hypos." Limits max number of indexed instances for each function to 1000 per genome. -- /gdp

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 14 20:20:32 2004 UTC (16 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.1: +3 -1 lines
Diff to previous 1.1
synch up Ross

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 1 20:46:40 2003 UTC (16 years, 2 months ago) by efrank
Branch: MAIN
CVS Tags: V00-00-00, V00-00-01, delong-01, delong-02

Makefile:
	get it to work with the release tools

All the rest:
	had to rename foo to foo.pl so that makefiles could recognize
	perl source from, say, Makefiles and READMEs

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