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revision 1.4, Fri Jul 27 13:38:09 2007 UTC revision 1.5, Fri Jul 27 18:55:10 2007 UTC
# Line 147  Line 147 
147      }      }
148  }  }
149    
150    #the ATP Synthase hack reaction
151    $core_metabolites{"C00009"} = 1;
152    $core_metabolites{"C00001"} = 1;
153    $core_metabolites{"C00008"} = 1;
154    $core_metabolites{"C00002"} = 1;
155    $reaction_reversible{"ATPSYN"} = 0;
156    $reaction_to_substrates{"ATPSYN"} = {};
157    $reaction_to_products{"ATPSYN"} = {};
158    $reaction_to_substrates{"ATPSYN"}->{"C00008"} = 1;
159    $reaction_to_substrates{"ATPSYN"}->{"C00009"} = 1;
160    $reaction_to_products{"ATPSYN"}->{"C00001"} = 1;
161    $reaction_to_products{"ATPSYN"}->{"C00002"} = 1;
162    $reaction_notes{"ATPSYN"} = {};
163    $reaction_notes{"ATPSYN"}->{"Manual Reaction:This fixes problems because we lack electron transport reactions."} = 1;
164    #end hack
165    
166  print STDERR "\tStage 1 - Complete\n" if($debug);  print STDERR "\tStage 1 - Complete\n" if($debug);
167    
168  print STDERR "\tStage 2 - Write SBML file\n" if($debug);  print STDERR "\tStage 2 - Write SBML file\n" if($debug);

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