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revision 1.2, Fri Jul 20 15:05:54 2007 UTC revision 1.4, Fri Jul 27 13:38:09 2007 UTC
# Line 26  Line 26 
26  {  {
27      $fig = new FIGV;      $fig = new FIGV;
28  }  }
29  Scenario::set_fig($fig);  Scenario::set_fig($fig,$genome_id);
30  print STDERR "Creating SBML model for genome $genome_id\n" if($debug);  print STDERR "Creating SBML model for genome $genome_id\n" if($debug);
31  print STDERR "\tStage 1 - Loading Scenarios, model inputs and biomass\n" if($debug);  print STDERR "\tStage 1 - Loading Scenarios, model inputs and biomass\n" if($debug);
32  my @scenarios = @{Scenario->get_genome_scenarios($genome_id,1)};  my @scenarios = @{Scenario->get_genome_scenarios($genome_id,1)};
# Line 44  Line 44 
44  }  }
45  close(INPUTS);  close(INPUTS);
46  #we are going to load up the cofactor compounds into inputs as well  #we are going to load up the cofactor compounds into inputs as well
47  open(COFACT,$filebase."cofactors.txt")  open(COFACT,$filebase."secondary_compounds.txt")
48      or die("Failed to open ".$filebase."cofactors.txt");      or die("Failed to open ".$filebase."secondary_compounds.txt");
49  while(<COFACT>)  while(<COFACT>)
50  {  {
51      chomp;      chomp;

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