[Bio] / FigKernelScripts / make_PFAM_HMM_derived_attributes.pl Repository:
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revision 1.1, Wed Aug 15 21:11:02 2007 UTC revision 1.2, Wed Aug 22 22:04:21 2007 UTC
# Line 1  Line 1 
1  $genome = shift(@ARGV);  $genome = shift(@ARGV);
2    #format for date is mmddyy
3    $date = shift(@ARGV);
4    
5  open(IN,"/vol/seed-attributes/computation_results/Pfam_TimeLogic_HMM_Search/$genome");  open(IN,"/vol/seed-attributes/computation_results/Pfam_TimeLogic_HMM_Search/$genome");
6  open(PFAM,">/vol/seed-attributes/PFAM/PFAM_hmm_derived_attributes_for_$genome.txt");  open(PFAM,">/vol/seed-attributes/PFAM/PFAM_hmm_derived_attributes_for_$genome.txt");
7    
8    print PFAM "$genome\tPFAM_attribute_by_HMM_search_on_TimeLogic\t$date;Pfam_version_22\n";
9    
10  my $id;  my $id;
11  my $pf;  my $pf;
12  my $start;  my $start;

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