[Bio] / FigKernelScripts / make_MPS_model.pl Repository:
ViewVC logotype

Diff of /FigKernelScripts/make_MPS_model.pl

Parent Directory Parent Directory | Revision Log Revision Log | View Patch Patch

revision 1.2, Fri Jul 20 15:05:09 2007 UTC revision 1.4, Fri Jul 27 13:37:38 2007 UTC
# Line 25  Line 25 
25      $fig = new FIGV;      $fig = new FIGV;
26  }  }
27  chomp $genome_id;  chomp $genome_id;
28  Scenario::set_fig($fig);  Scenario::set_fig($fig,$genome_id);
29  print STDERR "Creating SBML model for genome $genome_id\n" if($debug);  print STDERR "Creating SBML model for genome $genome_id\n" if($debug);
30  print STDERR "\tStage 1 - Loading Scenarios, model inputs and biomass\n" if($debug);  print STDERR "\tStage 1 - Loading Scenarios, model inputs and biomass\n" if($debug);
31  my @scenarios = @{Scenario->get_genome_scenarios($genome_id,1)};  my @scenarios = @{Scenario->get_genome_scenarios($genome_id,1)};
# Line 43  Line 43 
43  }  }
44  close(INPUTS);  close(INPUTS);
45  #we are going to load up the cofactor compounds into inputs as well  #we are going to load up the cofactor compounds into inputs as well
46  open(COFACT,$filebase."cofactors.txt")  open(COFACT,$filebase."secondary_compounds.txt")
47      or die("Failed to open ".$filebase."cofactors.txt");      or die("Failed to open ".$filebase."secondary_compounds.txt");
48  while(<COFACT>)  while(<COFACT>)
49  {  {
50      chomp;      chomp;

Legend:
Removed from v.1.2  
changed lines
  Added in v.1.4

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3