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Revision 1.1 - (download) (as text) (annotate)
Thu May 31 19:24:43 2007 UTC (12 years, 5 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Missing scripts.

#
# Run through the tbl files in the seed and produce
# new versions that don't have aliases that we don't want.
#

use FIG_Config;


for my $orgdir (<$FIG_Config::organisms/*>)
{
    my $tbl = "$orgdir/Features/peg/tbl";
    if (!open(T, "<$tbl"))
    {
	warn "Cannot open $tbl\n";
	next;
    }


    while (<T>)
    {
	chomp;
	my($peg, $loc, @aliases) = split(/\t/);

#	my @rem = grep { /^CDD|pfam/ or not /^SCP|NCM|PDB|MIM|EMBL|Uniprot|protein|uni|NM_|Entrez|Ens|ChromName|Band|NP|gi|GeneID|([a-z]{2-})/ } @aliases;

	map { print "$_\n" } @aliases;

    }
}

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