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Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 15 15:54:52 2010 UTC (9 years, 2 months ago) by overbeek
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.14: +4 -4 lines
Diff to previous 1.14 , to selected 1.6
get rid of RMA Key

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 15 19:08:48 2010 UTC (9 years, 5 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2010_0827
Changes since 1.13: +1 -3 lines
Diff to previous 1.13 , to selected 1.6
no atomic regulons

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 15 12:57:54 2010 UTC (9 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.12: +3 -1 lines
Diff to previous 1.12 , to selected 1.6
do not compute atomic regulons without the infrastructure

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 7 17:01:08 2010 UTC (9 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.11: +8 -2 lines
Diff to previous 1.11 , to selected 1.6
Changes to RunRMA to emit intermediate results and metadata; changes to ma_pipeline to correspond
to the new command line arguments.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jun 5 15:38:44 2010 UTC (9 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.10: +2 -1 lines
Diff to previous 1.10 , to selected 1.6
minor fix

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Sun May 30 21:34:44 2010 UTC (9 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.9: +2 -1 lines
Diff to previous 1.9 , to selected 1.6
support nonpeg features

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 20 20:22:28 2010 UTC (9 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +28 -3 lines
Diff to previous 1.8 , to selected 1.6
updates to pipeline

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 17 13:30:58 2010 UTC (9 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.7: +1 -1 lines
Diff to previous 1.7 , to selected 1.6
remove dups in pegs on

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 17 12:07:08 2010 UTC (9 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +3 -2 lines
Diff to previous 1.6
minor fixes

Revision 1.6 - (view) (download) (as text) (annotate) - [selected]
Sun May 16 22:50:17 2010 UTC (9 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +2 -2 lines
Diff to previous 1.5
updated Hope code

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sun May 16 00:38:02 2010 UTC (9 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +4 -2 lines
Diff to previous 1.4 , to selected 1.6
clean up some of the mismatches in peg ids

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 15 23:38:58 2010 UTC (9 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +2 -2 lines
Diff to previous 1.3 , to selected 1.6
new pipeline

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 6 02:25:33 2010 UTC (9 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +30 -11 lines
Diff to previous 1.2 , to selected 1.6
almost running

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 5 15:17:38 2010 UTC (9 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +11 -1 lines
Diff to previous 1.1 , to selected 1.6
fixes to pipeline

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 19 20:22:16 2010 UTC (9 years, 7 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2010_0526
Diff to selected 1.6
code from Hope

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