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revision 1.13, Tue Jun 15 12:57:54 2010 UTC revision 1.14, Tue Jun 15 19:08:48 2010 UTC
# Line 46  Line 46 
46  &run("cut -f2 $exp_ed/probes.always.on | sort -u > $exp_ed/pegs.always.on");  &run("cut -f2 $exp_ed/probes.always.on | sort -u > $exp_ed/pegs.always.on");
47  &run("Rscript $FIG_Config::bin/Pipeline.R $exp_ed/pegs.always.on $exp_ed/merged.clusters > $exp_ed/comments.by.Pipeline.R");  &run("Rscript $FIG_Config::bin/Pipeline.R $exp_ed/pegs.always.on $exp_ed/merged.clusters > $exp_ed/comments.by.Pipeline.R");
48    
49  # You need to compute a bunch of other things before the atomic regulons (update PCs, etc.)  &run("Rscript $FIG_Config::bin/SplitGeneSets.R $exp_ed/merged.clusters 0.7 > $exp_ed/split.clusters");
 #&run("Rscript $FIG_Config::bin/SplitGeneSets.R $exp_ed/merged.clusters 0.7 > $exp_ed/split.clusters");  
 &run("$FIG_Config::bin/compute_atomic_regulons $genome");  
50    
51  sub make_missing_probes  sub make_missing_probes
52  {  {

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