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Revision 1.3 - (download) (as text) (annotate)
Mon Dec 5 18:56:37 2005 UTC (14 years, 2 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, caBIG-05Apr06-00, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, caBIG-13Feb06-00, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.2: +17 -0 lines
Add license words.

#
# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
#


# -*- perl -*-

###########################################
use strict;

use FIG;
my $fig = new FIG;

my $usage = "usage: load_local_maps";

use DBrtns;

&load_ec_and_map_data;
undef $fig;

sub load_ec_and_map_data {
    
    my($map);

    my $dbf = $fig->{_dbf};

    #
    # If the proper directory structure is not there,
    # create it as empty.
    #

    my $mapdir = "$FIG_Config::data/MAP_SUPPORT";
    &FIG::verify_dir($mapdir);
    &FIG::verify_dir("$mapdir/Maps");

    if (! -f "$mapdir/INDEX")
    {
	open(my $fh, ">$mapdir/INDEX");
	close($fh);
	chmod 0777, "$mapdir/INDEX";
    }

    $dbf->load_table( tbl => "map_name",
		      file => "$FIG_Config::data/MAP_SUPPORT/INDEX"
		      );
    $dbf->vacuum_it("map_name");

    open(ECMAP,">$FIG_Config::temp/ec_map.table")
	|| die "could not open $FIG_Config::temp/ec_map.table";

    my @maps = `cut -f1 $FIG_Config::data/MAP_SUPPORT/INDEX | sort -u`;
    chop @maps;
	
    foreach $map (@maps)
    {
	foreach $_ (`cut -f1 $FIG_Config::data/MAP_SUPPORT/Maps/$map/role_coords.table | sort -u`)
	{
	    chop;
	    print ECMAP "$_\t$map\n";
	}
    }
    close(ECMAP);

    $dbf->load_table( tbl => "ec_map",
		      file => "$FIG_Config::temp/ec_map.table"
		      );
    
    $dbf->vacuum_it("ec_map");
    #unlink("$FIG_Config::temp/ec_map.table");
}


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