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Revision 1.6 - (download) (as text) (annotate)
Wed Jun 17 17:04:59 2009 UTC (10 years, 5 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, rast_rel_2014_0912, myrast_rel40, mgrast_dev_05262011, mgrast_dev_04082011, rast_rel_2010_0928, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, rast_rel_2011_0119, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, rast_rel_2009_07_09, rast_rel_2010_0827, myrast_33, rast_rel_2011_0928, mgrast_dev_04052011, mgrast_dev_02222011, mgrast_dev_10262011, HEAD
Changes since 1.5: +6 -1 lines
support for change in format to the KEGG/ECtable.

# -*- perl -*-
#
# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
#


use strict;

use FIG;
use Tracer;

my $fig = new FIG;
Trace("Loading EC names.") if T(2);

Open(\*TMPIN, "<$FIG_Config::data/KEGG/ECtable");
my $tempFile = "$FIG_Config::temp/ec_names.table";
Open(\*TMPOUT, ">$tempFile");

while (defined($_ = <TMPIN>))
{
    if ($_ =~ /^\s*(\d+\.\d+\.\d+\.\d+)\s+(\S[^;\n]+)/)
    {
	print TMPOUT "$1\t$2\n";
    }
    elsif (/^D\s+(\d+\.\d+\.\d+\.\d+)\s+(\S[^;\n]+)/)
    {
	print TMPOUT "$1\t$2\n";
    }
	
}
close(TMPIN);
close(TMPOUT);

$fig->reload_table('all', "ec_names",
				   "ec varchar(12) UNIQUE NOT NULL, name varchar(200), PRIMARY KEY ( ec )",
				   { }, $tempFile);
unlink($tempFile);
undef $fig;
Trace("EC names loaded.") if T(2);

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