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Revision 1.46 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 30 00:20:31 2011 UTC (9 years, 2 months ago) by redwards
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.45: +2 -2 lines
Diff to previous 1.45 , to selected 1.31
changing the attribute of the genome table

Revision 1.45 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 6 14:00:37 2007 UTC (12 years, 4 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_release_2008_09_29
Changes since 1.44: +8 -8 lines
Diff to previous 1.44 , to selected 1.31
Changed POD format for better compatability with Wiki.

Revision 1.44 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 5 19:09:22 2006 UTC (13 years, 4 months ago) by olson
Branch: MAIN
Changes since 1.43: +24 -9 lines
Diff to previous 1.43 , to selected 1.31
preindex tables if configured to do so.

Revision 1.43 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 25 04:08:43 2006 UTC (13 years, 7 months ago) by redwards
Branch: MAIN
Changes since 1.42: +11 -1 lines
Diff to previous 1.42 , to selected 1.31
finally, I know what the ev code problem is. There are too many of them because we keep creating them and saving the old ones.

Revision 1.42 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 23 04:51:55 2006 UTC (14 years ago) by overbeek
Branch: MAIN
Changes since 1.41: +1 -1 lines
Diff to previous 1.41 , to selected 1.31
RAE: Yummy attributes

Revision 1.41 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 15 21:29:41 2006 UTC (14 years, 2 months ago) by parrello
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.40: +7 -5 lines
Diff to previous 1.40 , to selected 1.31
Converted to use "StandardSetup".

Revision 1.40 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 6 05:09:29 2006 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.39: +1 -0 lines
Diff to previous 1.39 , to selected 1.31
Fixed to keep a backup of any attribute files overwritten by a clean copy.

Revision 1.39 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 6 00:41:06 2006 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.38: +12 -7 lines
Diff to previous 1.38 , to selected 1.31
Fixed the processing of feature attributes.

Revision 1.38 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 5 23:58:54 2006 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.37: +8 -2 lines
Diff to previous 1.37 , to selected 1.31
Added more tracing.

Revision 1.37 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 5 23:48:13 2006 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.36: +32 -14 lines
Diff to previous 1.36 , to selected 1.31
Fixed some more bugs.

Revision 1.36 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 5 22:20:16 2006 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.35: +2 -2 lines
Diff to previous 1.35 , to selected 1.31
Fixed an error in the directory handling for feature attributes.

Revision 1.35 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 5 21:34:40 2006 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.34: +10 -5 lines
Diff to previous 1.34 , to selected 1.31
*** empty log message ***

Revision 1.34 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 5 21:31:24 2006 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.33: +310 -205 lines
Diff to previous 1.33 , to selected 1.31
Rewrote to automatically clean bad keys and errors from attribute files.

Revision 1.33 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 4 20:12:31 2006 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.32: +5 -4 lines
Diff to previous 1.32 , to selected 1.31
Added a debug switch to figure out the key problem..

Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 4 16:28:16 2006 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.31: +4 -4 lines
Diff to previous 1.31
RAE: ignore files ending ~

Revision 1.31 - (view) (download) (as text) (annotate) - [selected]
Thu Dec 15 20:58:35 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.30: +3 -2 lines
Diff to previous 1.30
Potential fix for load_attributes

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 10 18:08:17 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.29: +2 -2 lines
Diff to previous 1.29 , to selected 1.31
RAE: Changed attribute key to tag throughout

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 18:56:37 2005 UTC (14 years, 4 months ago) by olson
Branch: MAIN
Changes since 1.28: +17 -0 lines
Diff to previous 1.28 , to selected 1.31
Add license words.

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 24 00:02:30 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.27: +5 -4 lines
Diff to previous 1.27 , to selected 1.31
ignoring keys without values

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 23 20:34:59 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.26: +80 -14 lines
Diff to previous 1.26 , to selected 1.31
major changes to attributes and protein families. There are changes to several modules to deal with new attributes database, and simultaneous updates to protein families

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 21 20:56:20 2005 UTC (14 years, 6 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-00-00-00, caBIG-dataload-0
Changes since 1.25: +2 -6 lines
Diff to previous 1.25 , to selected 1.31
correcting \r error

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 1 22:02:22 2005 UTC (14 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.24: +4 -0 lines
Diff to previous 1.24 , to selected 1.31
update evidence code writeup

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jul 28 22:06:11 2005 UTC (14 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.23: +1 -1 lines
Diff to previous 1.23 , to selected 1.31
removing trace in load_attributes by Rob

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 27 21:16:42 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.22: +2 -2 lines
Diff to previous 1.22 , to selected 1.31
fixng links

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 22 22:27:48 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.21: +1 -0 lines
Diff to previous 1.21 , to selected 1.31
updating load_attributes for better errors

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 22 22:23:50 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.20: +1 -0 lines
Diff to previous 1.20 , to selected 1.31
updating load_attributes for better errors

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 19 06:12:44 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.19: +4 -3 lines
Diff to previous 1.19 , to selected 1.31
Final touches to Attributes code for today

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 19 04:54:21 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.18: +2 -0 lines
Diff to previous 1.18 , to selected 1.31
Updating attributes code in seed

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 18 03:12:11 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.17: +43 -5 lines
Diff to previous 1.17 , to selected 1.31
Updating attributes code

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jul 17 17:48:12 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.16: +144 -195 lines
Diff to previous 1.16 , to selected 1.31
new load_attributes, basically rewritten but does the same thing

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 15 03:23:54 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.15: +19 -0 lines
Diff to previous 1.15 , to selected 1.31
updating protein_info.cgi

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jul 9 14:01:45 2005 UTC (14 years, 8 months ago) by overbeek
Branch: MAIN
CVS Tags: merge-trunktag-bodev_news-3
Changes since 1.14: +8 -8 lines
Diff to previous 1.14 , to selected 1.31
fixes to load_attributes

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 9 05:51:06 2005 UTC (14 years, 9 months ago) by parrello
Branch: MAIN
CVS Tags: Root-bobdev_news, merge-bobdev_news-1, merge-bobdev_news-2, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2
Branch point for: Branch-bobdev_news
Changes since 1.13: +118 -109 lines
Diff to previous 1.13 , to selected 1.31
*** empty log message ***

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 13 00:03:52 2005 UTC (14 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.12: +1 -0 lines
Diff to previous 1.12 , to selected 1.31
fixed load_attributes. Hopefully

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 12 22:58:32 2005 UTC (14 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.11: +2 -3 lines
Diff to previous 1.11 , to selected 1.31
debugging load_attributes

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 12 22:47:23 2005 UTC (14 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.10: +8 -8 lines
Diff to previous 1.10 , to selected 1.31
debugging load_attrubutes

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 12 21:46:00 2005 UTC (14 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.9: +9 -2 lines
Diff to previous 1.9 , to selected 1.31
add error check to load_attributes

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 22 17:02:48 2005 UTC (15 years ago) by redwards
Branch: MAIN
CVS Tags: efrank-preMakefileToStandardMk
Changes since 1.8: +51 -5 lines
Diff to previous 1.8 , to selected 1.31
minor changes to marine seed entry and added a new background

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 22 03:13:30 2005 UTC (15 years ago) by redwards
Branch: MAIN
Changes since 1.7: +27 -14 lines
Diff to previous 1.7 , to selected 1.31
adding conflict to complete_genomes.pl

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 13 17:51:28 2005 UTC (15 years ago) by redwards
Branch: MAIN
Changes since 1.6: +1 -0 lines
Diff to previous 1.6 , to selected 1.31
changes to load_attributes to fake url column and css sheets

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 11 03:04:32 2005 UTC (15 years ago) by redwards
Branch: MAIN
Changes since 1.5: +6 -3 lines
Diff to previous 1.5 , to selected 1.31
Making tag/value pairs work

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 4 22:37:06 2005 UTC (15 years, 1 month ago) by redwards
Branch: MAIN
Changes since 1.4: +12 -1 lines
Diff to previous 1.4 , to selected 1.31
Added color by organism attributes to subsystems page

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 4 06:22:10 2005 UTC (15 years, 1 month ago) by redwards
Branch: MAIN
Changes since 1.3: +85 -39 lines
Diff to previous 1.3 , to selected 1.31
Big updates to FIG.pm for the addition of methods to properly handle attributes. Also modified genome_statistics to take advantage of these new methods. load_attributes will load genomes and other attributes but doesn't not yet use the new methods (but should), and Attributes.html is some docs.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Feb 27 01:39:55 2005 UTC (15 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.2: +60 -13 lines
Diff to previous 1.2 , to selected 1.31
major changes in notion of function and load_attributes

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 17 18:52:59 2004 UTC (15 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +1 -1 lines
Diff to previous 1.1 , to selected 1.31
load attributes fix

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Sep 13 02:12:21 2004 UTC (15 years, 6 months ago) by overbeek
Branch: MAIN
Diff to selected 1.31
add attributes as key-value pairs attached to fids

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