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Revision 1.46 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 30 00:20:31 2011 UTC (8 years, 9 months ago) by redwards
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.45: +2 -2 lines
Diff to previous 1.45
changing the attribute of the genome table

Revision 1.45 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 6 14:00:37 2007 UTC (11 years, 11 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_release_2008_09_29
Changes since 1.44: +8 -8 lines
Diff to previous 1.44
Changed POD format for better compatability with Wiki.

Revision 1.44 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 5 19:09:22 2006 UTC (12 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.43: +24 -9 lines
Diff to previous 1.43
preindex tables if configured to do so.

Revision 1.43 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 25 04:08:43 2006 UTC (13 years, 2 months ago) by redwards
Branch: MAIN
Changes since 1.42: +11 -1 lines
Diff to previous 1.42
finally, I know what the ev code problem is. There are too many of them because we keep creating them and saving the old ones.

Revision 1.42 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 23 04:51:55 2006 UTC (13 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.41: +1 -1 lines
Diff to previous 1.41
RAE: Yummy attributes

Revision 1.41 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 15 21:29:41 2006 UTC (13 years, 10 months ago) by parrello
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.40: +7 -5 lines
Diff to previous 1.40
Converted to use "StandardSetup".

Revision 1.40 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 6 05:09:29 2006 UTC (13 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.39: +1 -0 lines
Diff to previous 1.39
Fixed to keep a backup of any attribute files overwritten by a clean copy.

Revision 1.39 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 6 00:41:06 2006 UTC (13 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.38: +12 -7 lines
Diff to previous 1.38
Fixed the processing of feature attributes.

Revision 1.38 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 5 23:58:54 2006 UTC (13 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.37: +8 -2 lines
Diff to previous 1.37
Added more tracing.

Revision 1.37 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 5 23:48:13 2006 UTC (13 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.36: +32 -14 lines
Diff to previous 1.36
Fixed some more bugs.

Revision 1.36 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 5 22:20:16 2006 UTC (13 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.35: +2 -2 lines
Diff to previous 1.35
Fixed an error in the directory handling for feature attributes.

Revision 1.35 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 5 21:34:40 2006 UTC (13 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.34: +10 -5 lines
Diff to previous 1.34
*** empty log message ***

Revision 1.34 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 5 21:31:24 2006 UTC (13 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.33: +310 -205 lines
Diff to previous 1.33
Rewrote to automatically clean bad keys and errors from attribute files.

Revision 1.33 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 4 20:12:31 2006 UTC (13 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.32: +5 -4 lines
Diff to previous 1.32
Added a debug switch to figure out the key problem..

Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 4 16:28:16 2006 UTC (13 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.31: +4 -4 lines
Diff to previous 1.31
RAE: ignore files ending ~

Revision 1.31 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 15 20:58:35 2005 UTC (13 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.30: +3 -2 lines
Diff to previous 1.30
Potential fix for load_attributes

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 10 18:08:17 2005 UTC (13 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.29: +2 -2 lines
Diff to previous 1.29
RAE: Changed attribute key to tag throughout

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 18:56:37 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.28: +17 -0 lines
Diff to previous 1.28
Add license words.

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 24 00:02:30 2005 UTC (13 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.27: +5 -4 lines
Diff to previous 1.27
ignoring keys without values

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 23 20:34:59 2005 UTC (13 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.26: +80 -14 lines
Diff to previous 1.26
major changes to attributes and protein families. There are changes to several modules to deal with new attributes database, and simultaneous updates to protein families

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 21 20:56:20 2005 UTC (14 years, 1 month ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-00-00-00, caBIG-dataload-0
Changes since 1.25: +2 -6 lines
Diff to previous 1.25
correcting \r error

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 1 22:02:22 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.24: +4 -0 lines
Diff to previous 1.24
update evidence code writeup

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jul 28 22:06:11 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.23: +1 -1 lines
Diff to previous 1.23
removing trace in load_attributes by Rob

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 27 21:16:42 2005 UTC (14 years, 3 months ago) by redwards
Branch: MAIN
Changes since 1.22: +2 -2 lines
Diff to previous 1.22
fixng links

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 22 22:27:48 2005 UTC (14 years, 3 months ago) by redwards
Branch: MAIN
Changes since 1.21: +1 -0 lines
Diff to previous 1.21
updating load_attributes for better errors

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 22 22:23:50 2005 UTC (14 years, 3 months ago) by redwards
Branch: MAIN
Changes since 1.20: +1 -0 lines
Diff to previous 1.20
updating load_attributes for better errors

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 19 06:12:44 2005 UTC (14 years, 3 months ago) by redwards
Branch: MAIN
Changes since 1.19: +4 -3 lines
Diff to previous 1.19
Final touches to Attributes code for today

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 19 04:54:21 2005 UTC (14 years, 3 months ago) by redwards
Branch: MAIN
Changes since 1.18: +2 -0 lines
Diff to previous 1.18
Updating attributes code in seed

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 18 03:12:11 2005 UTC (14 years, 4 months ago) by redwards
Branch: MAIN
Changes since 1.17: +43 -5 lines
Diff to previous 1.17
Updating attributes code

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jul 17 17:48:12 2005 UTC (14 years, 4 months ago) by redwards
Branch: MAIN
Changes since 1.16: +144 -195 lines
Diff to previous 1.16
new load_attributes, basically rewritten but does the same thing

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 15 03:23:54 2005 UTC (14 years, 4 months ago) by redwards
Branch: MAIN
Changes since 1.15: +19 -0 lines
Diff to previous 1.15
updating protein_info.cgi

Revision 1.14.2.1 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 12 15:39:01 2005 UTC (14 years, 4 months ago) by olson
Branch: Branch-bobdev_news
CVS Tags: merge-bodev_news-3
Changes since 1.14: +8 -8 lines
Diff to previous 1.14 , to next main 1.46
Merged changes from trunk.

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jul 9 14:01:45 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
CVS Tags: merge-trunktag-bodev_news-3
Changes since 1.14: +8 -8 lines
Diff to previous 1.14
fixes to load_attributes

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 9 05:51:06 2005 UTC (14 years, 5 months ago) by parrello
Branch: MAIN
CVS Tags: Root-bobdev_news, merge-bobdev_news-1, merge-bobdev_news-2, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2
Branch point for: Branch-bobdev_news
Changes since 1.13: +118 -109 lines
Diff to previous 1.13
*** empty log message ***

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 13 00:03:52 2005 UTC (14 years, 7 months ago) by redwards
Branch: MAIN
Changes since 1.12: +1 -0 lines
Diff to previous 1.12
fixed load_attributes. Hopefully

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 12 22:58:32 2005 UTC (14 years, 7 months ago) by redwards
Branch: MAIN
Changes since 1.11: +2 -3 lines
Diff to previous 1.11
debugging load_attributes

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 12 22:47:23 2005 UTC (14 years, 7 months ago) by redwards
Branch: MAIN
Changes since 1.10: +8 -8 lines
Diff to previous 1.10
debugging load_attrubutes

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 12 21:46:00 2005 UTC (14 years, 7 months ago) by redwards
Branch: MAIN
Changes since 1.9: +9 -2 lines
Diff to previous 1.9
add error check to load_attributes

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 22 17:02:48 2005 UTC (14 years, 7 months ago) by redwards
Branch: MAIN
CVS Tags: efrank-preMakefileToStandardMk
Changes since 1.8: +51 -5 lines
Diff to previous 1.8
minor changes to marine seed entry and added a new background

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 22 03:13:30 2005 UTC (14 years, 7 months ago) by redwards
Branch: MAIN
Changes since 1.7: +27 -14 lines
Diff to previous 1.7
adding conflict to complete_genomes.pl

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 13 17:51:28 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.6: +1 -0 lines
Diff to previous 1.6
changes to load_attributes to fake url column and css sheets

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 11 03:04:32 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.5: +6 -3 lines
Diff to previous 1.5
Making tag/value pairs work

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 4 22:37:06 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.4: +12 -1 lines
Diff to previous 1.4
Added color by organism attributes to subsystems page

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 4 06:22:10 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.3: +85 -39 lines
Diff to previous 1.3
Big updates to FIG.pm for the addition of methods to properly handle attributes. Also modified genome_statistics to take advantage of these new methods. load_attributes will load genomes and other attributes but doesn't not yet use the new methods (but should), and Attributes.html is some docs.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Feb 27 01:39:55 2005 UTC (14 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +60 -13 lines
Diff to previous 1.2
major changes in notion of function and load_attributes

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 17 18:52:59 2004 UTC (15 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +1 -1 lines
Diff to previous 1.1
load attributes fix

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Sep 13 02:12:21 2004 UTC (15 years, 2 months ago) by overbeek
Branch: MAIN
add attributes as key-value pairs attached to fids

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