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Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 22 21:14:08 2016 UTC (3 years, 3 months ago) by olson
Branch: MAIN
CVS Tags: HEAD
Changes since 1.19: +130 -37 lines
Diff to previous 1.19
Commit updates to kmer build code.

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 7 22:28:15 2016 UTC (3 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.18: +89 -10 lines
Diff to previous 1.18
Mods to support keeping kmers for prots with functions that are in SS, and
independent protein data files.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 3 16:03:29 2015 UTC (4 years, 3 months ago) by olson
Branch: MAIN
Changes since 1.17: +9 -4 lines
Diff to previous 1.17
Modify the minimum-functions condition to require that the minimum be across different genomes.
Also fix the conditional such that min-reps-required is really the min reps required, not min reps required - 1.

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 22 01:56:37 2015 UTC (4 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.16: +10 -3 lines
Diff to previous 1.16
Fix loop.

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jun 21 15:08:50 2015 UTC (4 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.15: +41 -16 lines
Diff to previous 1.15
Changes for kmer build process.

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 6 21:58:38 2015 UTC (4 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.14: +5 -1 lines
Diff to previous 1.14
Kmer manipulation updates.

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 9 18:56:08 2015 UTC (4 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.13: +9 -9 lines
Diff to previous 1.13
Add $! to failure messages
Support using other seeds and pulling genome list from OTU genome.sets file.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 7 17:22:10 2015 UTC (4 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.12: +1 -1 lines
Diff to previous 1.12
Make some directories. Push sort size to be 40G for running on modern systems.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 20 16:38:09 2014 UTC (5 years, 10 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.11: +3 -2 lines
Diff to previous 1.11
get rid of hypo constraint

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 25 13:53:04 2013 UTC (5 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.10: +3 -1 lines
Diff to previous 1.10
force rebuild of memory map

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 21 23:15:59 2013 UTC (5 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.9: +2 -0 lines
Diff to previous 1.9
release intermediate files

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 21 01:33:52 2013 UTC (5 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +6 -6 lines
Diff to previous 1.8
rast-dirs again

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 20 22:54:54 2013 UTC (5 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.7: +1 -1 lines
Diff to previous 1.7
rast-dirs again

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 20 17:06:16 2013 UTC (5 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +1 -1 lines
Diff to previous 1.6
fix to rast_dirs

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 20 16:55:22 2013 UTC (5 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +1 -1 lines
Diff to previous 1.5
fix to rast-dirs

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 13 23:26:09 2013 UTC (5 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +15 -2 lines
Diff to previous 1.4
handle searches trained from Rast Directories

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 16 13:50:23 2013 UTC (6 years ago) by overbeek
Branch: MAIN
Changes since 1.3: +2 -2 lines
Diff to previous 1.3
minor

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 14 09:27:36 2013 UTC (6 years ago) by overbeek
Branch: MAIN
Changes since 1.2: +1 -1 lines
Diff to previous 1.2
get pub_seed flag as p

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 14 08:47:55 2013 UTC (6 years ago) by overbeek
Branch: MAIN
Changes since 1.1: +42 -8 lines
Diff to previous 1.1
support core-seed

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Oct 27 14:08:23 2013 UTC (6 years ago) by overbeek
Branch: MAIN
build kmers

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