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1 : olson 1.2 #
2 :     # Copyright (c) 2003-2006 University of Chicago and Fellowship
3 :     # for Interpretations of Genomes. All Rights Reserved.
4 :     #
5 :     # This file is part of the SEED Toolkit.
6 :     #
7 :     # The SEED Toolkit is free software. You can redistribute
8 :     # it and/or modify it under the terms of the SEED Toolkit
9 :     # Public License.
10 :     #
11 :     # You should have received a copy of the SEED Toolkit Public License
12 :     # along with this program; if not write to the University of Chicago
13 :     # at info@ci.uchicago.edu or the Fellowship for Interpretation of
14 :     # Genomes at veronika@thefig.info or download a copy from
15 :     # http://www.theseed.org/LICENSE.TXT.
16 :     #
17 :    
18 : overbeek 1.1 # This script takes as input a sequence of add, delete and update transactions.
19 :     #
20 :     # An add amounts to
21 :     #
22 :     # verifying the feature by comparing the sequence from the GFF3
23 :     # with the sequence extracted from the specified location
24 :     #
25 :     # invoking $fig->add_feature($genome,"peg",$location,$aliases,$translation,$fid)
26 :     #
27 :     # <<<<< NOTE: add optional fid to add_feature >>>>>>>
28 :     #
29 :     # The delete may just invoke the existing delete_feature
30 :     #
31 :     # The update should be "add, salvage annotations, delete"
32 :     #

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