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Revision 1.1 - (download) (as text) (annotate)
Thu May 31 19:24:43 2007 UTC (12 years, 8 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Missing scripts.

#
# Index peg.syns.
#

use DB_File;
use Data::Dumper;

use strict;
use FIG;
use FIG_Config;
use File::Basename;
use Carp 'croak';

@ARGV == 2 or die "Usage: $0 peg.synonyms peg.synonyms.index\n";

my $pegsyn = shift;
my $pegsyn_index = shift;


my %indexf;
my $indexf_tied = tie %indexf, 'DB_File', "$pegsyn_index.f", O_RDWR | O_CREAT, 0666, $DB_BTREE;

$indexf_tied or die("Creation of hash $pegsyn_index.f failed: $!\n");

my %indext;
my $indext_tied = tie %indext, 'DB_File', "$pegsyn_index.t", O_RDWR | O_CREAT, 0666, $DB_BTREE;

$indext_tied or die("Creation of hash $pegsyn_index.t failed: $!\n");

open(SYNS, $pegsyn) or die $!;
my($to, $to_len, $from);
my %peg_mapping;
while (defined($_ = <SYNS>))
{
    if (($to, $to_len, $from) =  /^([^,]+),(\d+)\t(\S+)/)
    {
	my @from = map { [ split(/,/, $_) ] } split(/;/,$from);
	if (@from > 0)
	{
	    $indext{$to} = "$to_len:$from";
	    for my $ent (@from)
	    {
		my($fid, $flen) = @$ent;
		$indexf{$fid} = "$flen:$to";
	    }
#	    map { $index{$_->[0]} = $to } grep { $_->[0] =~ /^fig/ } @from;
	}
    }
}

$indexf_tied->sync();
$indext_tied->sync();
untie %indexf;
untie %indext;
close(SYNS);

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