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Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 18:56:37 2005 UTC (14 years, 3 months ago) by olson
Branch: MAIN
CVS Tags: HEAD, caBIG-05Apr06-00, caBIG-13Feb06-00, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.3: +17 -0 lines
Diff to previous 1.3
Add license words.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 10 20:16:51 2005 UTC (14 years, 4 months ago) by efrank
Branch: MAIN
CVS Tags: caBIG-00-00-00
Changes since 1.2: +3 -4 lines
Diff to previous 1.2
mv cv files from Global to Global/CV.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Oct 27 19:04:29 2005 UTC (14 years, 5 months ago) by efrank
Branch: MAIN
Changes since 1.1: +21 -3 lines
Diff to previous 1.1
by default, look for input GO.terms_ids_obs in Data/Global but allow -go_file
to override.  don't blame me- that's what GO calls the file.

idea is that we're following robs pattern and sometime later there may be
a "download GO" button that fetches latest version into Global and then
gff2Ontology -make_go_triplet_file can build new controlled vocab search
table that is used by cv.cgi.  (all of that works except for the button)

note- it's a separate issue to run gff2Ontology on a gff to rip out the
GO and put it into the Seed as controlled vocab.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Oct 27 16:32:54 2005 UTC (14 years, 5 months ago) by efrank
Branch: MAIN
#########################################################################
# A little misnamed as this only handle's GO at the moment.
#
# Maybe this should just disappear and be internalized by gff2Seed??
#
# Pull the Ontology information from column9 and insert it as
# controlled vocabulary for the relevant PEGs. We assume the
# GFF has already been loaded into the Seed instance.
#
# Running this modifies the attributes tables and files.  It does NOT
# zero anything before running, so do that by hand if needed.
#
#########################################################################

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