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1 : olson 1.2 #
2 :     # Copyright (c) 2003-2006 University of Chicago and Fellowship
3 :     # for Interpretations of Genomes. All Rights Reserved.
4 :     #
5 :     # This file is part of the SEED Toolkit.
6 :     #
7 :     # The SEED Toolkit is free software. You can redistribute
8 :     # it and/or modify it under the terms of the SEED Toolkit
9 :     # Public License.
10 :     #
11 :     # You should have received a copy of the SEED Toolkit Public License
12 :     # along with this program; if not write to the University of Chicago
13 :     # at info@ci.uchicago.edu or the Fellowship for Interpretation of
14 :     # Genomes at veronika@thefig.info or download a copy from
15 :     # http://www.theseed.org/LICENSE.TXT.
16 :     #
17 :    
18 : overbeek 1.1 use FIG;
19 :    
20 :     my $fig = new FIG;
21 :    
22 :     $usage = "get_translations Id1 Id2 ... > fasta.of.translations";
23 :    
24 : overbeek 1.3 if (@ARGV == 0) { @ARGV = map { $_ =~ /^(\S+)/; $1 } <STDIN> }
25 : overbeek 1.1
26 :     foreach $id (@ARGV)
27 :     {
28 :     next if ($seen{$id});
29 :     $seen{$id} = 1;
30 :    
31 :     if ($seq = $fig->get_translation($id))
32 :     {
33 :     print ">$id\n$seq\n";
34 :     }
35 :     else
36 :     {
37 :     print STDERR "Could not get translation for $id\n";
38 :     }
39 :     }

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