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Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 22 04:10:24 2009 UTC (10 years, 1 month ago) by gdpusch
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.10: +1 -1 lines
Diff to previous 1.10
Modified to remove complaints about uninitialed values when TBL entry does not contain aliases.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 1 18:12:53 2009 UTC (10 years, 4 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2009_07_09
Changes since 1.9: +4 -2 lines
Diff to previous 1.9
if there be columns 3, append them as comments to the fasta.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 7 22:44:19 2007 UTC (11 years, 11 months ago) by gdpusch
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_release_2008_09_29
Changes since 1.8: +50 -23 lines
Diff to previous 1.8
Added support for multi-exon locations. -- /gdp

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 17 12:40:37 2007 UTC (12 years, 6 months ago) by gdpusch
Branch: MAIN
Changes since 1.7: +28 -6 lines
Diff to previous 1.7
Added support for alternate genetic codes. -- /gdp

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 11 04:16:51 2007 UTC (12 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +14 -1 lines
Diff to previous 1.6
Added check against duplicate contig IDs. -- /gdp

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jun 11 10:48:06 2006 UTC (13 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +33 -38 lines
Diff to previous 1.5
Added check for failed subsequence extraction or translation. -- /gdp

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 18:56:37 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.4: +17 -0 lines
Diff to previous 1.4
Add license words.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 20 16:08:18 2004 UTC (15 years ago) by overbeek
Branch: MAIN
CVS Tags: Root-bobdev_news, caBIG-00-00-00, caBIG-dataload-0, efrank-preMakefileToStandardMk, merge-bobdev_news-1, merge-bobdev_news-2, merge-bodev_news-3, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2, merge-trunktag-bodev_news-3
Branch point for: Branch-bobdev_news
Changes since 1.3: +3 -0 lines
Diff to previous 1.3
Modified to handle included terminal STOP codons. -- /gdp

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 3 21:24:31 2003 UTC (15 years, 11 months ago) by overbeek
Branch: MAIN
CVS Tags: delong-01, delong-02
Changes since 1.2: +1 -1 lines
Diff to previous 1.2
*** empty log message ***

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 3 19:39:29 2003 UTC (15 years, 11 months ago) by efrank
Branch: MAIN
Changes since 1.1: +2 -4 lines
Diff to previous 1.1

fixed a bunch of changes

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 1 20:46:40 2003 UTC (15 years, 11 months ago) by efrank
Branch: MAIN
CVS Tags: V00-00-00, V00-00-01

Makefile:
	get it to work with the release tools

All the rest:
	had to rename foo to foo.pl so that makefiles could recognize
	perl source from, say, Makefiles and READMEs

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