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Revision 1.2 - (download) (as text) (annotate)
Mon Dec 5 18:56:37 2005 UTC (14 years ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, caBIG-05Apr06-00, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, caBIG-13Feb06-00, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.1: +17 -0 lines
Add license words.

#
# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
#


use FIG;
$fig = new FIG;

$usage = "usage: get_class_examples fc_output MinNonHypo MaxNonHypo MinHypo MaxHypo > examples";

(
 ($fc_out = shift @ARGV) &&
 ($minN   = shift @ARGV) &&
 ($maxN   = shift @ARGV) &&
 ($minH   = shift @ARGV) &&
 ($maxH   = shift @ARGV)
)
    || die $usage;

open(CLUSTERS,"cut -f1,3 $fc_out | cluster_objects |") 
    || die $usage;

while (defined($_ = <CLUSTERS>))
{
    @fids = ($_ =~ /fig\|\d+\.\d+\.peg\.\d+/g);
    @hypo = ();
    @non = ();
    foreach $peg (@fids)
    {
	$func = $fig->function_of($peg);
	if (&FIG::hypo($func))
	{
	    push(@hypo,[$peg,$func]);
	}
	else
	{
	    push(@non,[$peg,$func]);
	}
    }

    if (&FIG::between($minN,scalar @non,$maxN) &&
	&FIG::between($minH,scalar @hypo,$maxH))
    {
	foreach $x (@non)
	{
	    ($peg,$func) = @$x;
	    print "$peg\t$func\n";
	}
	print "\n";

	foreach $x (@hypo)
	{
	    ($peg,$func) = @$x;
	    print "$peg\t$func\n";
	}
	print "======\n\n";
    }
}

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