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Revision 1.1 - (download) (as text) (annotate)
Wed Oct 11 18:19:06 2006 UTC (13 years, 1 month ago) by redwards
Branch: MAIN
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Adding tools to handle essentiality data for Sveta

# __ perl__
#

=head1 genomes_with_essentiality_data

Generate a list of genomes with essentiality data, and update the attributes to make sure that is aligned, and the genomes are displayed in subsys.cgi

=head2 author

Rob Edwards
October 10th, 2006

=cut

use strict;
use FIG;
my $fig=new FIG;

my %real=map {($_=>1)} $fig->get_genomes_with_attribute("essential");
print STDERR "Real are ", join(" ", keys %real), "\n";
my %current=map {($_->[0]=>1)} $fig->get_attributes(undef, "has_essentiality_data");
print STDERR "Current list is ", join(" ", keys %current), "\n";

# delete genomes that have essentiality data that shouldn't
foreach my $genome (keys %current) {unless ($real{$genome}) {$fig->delete_attribute($genome, "has_essentiality_data")}}

# now add genomes that have essentiality data
foreach my $genome (keys %real) {unless ($current{$genome}) {$fig->add_attribute($genome, "has_essentiality_data")}}









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