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Revision 1.5 - (download) (as text) (annotate)
Mon Dec 5 18:56:37 2005 UTC (14 years, 2 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, caBIG-05Apr06-00, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, caBIG-13Feb06-00, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.4: +17 -0 lines
Add license words.

#
# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
#

$usage = "usage: generate_pin_caches Dir < PEGs";

use FIG;
my $fig = new FIG;

($dir = shift @ARGV) || die $usage;

&FIG::verify_dir("$dir/Cache");
&FIG::verify_dir("$dir/Save");

while (defined($_ = <STDIN>))
{
    if ($_ =~ /^(fig\|\d+\.\d+\.peg\.\d+)/)
    {
	$peg = $1;
	if ((! -s "$dir/Cache/$peg:1") &&
	    ($fig->coupled_to($peg) > 0))
	{
	    $ENV{'REQUEST_METHOD'} = "GET";
	    $ENV{'QUERY_STRING'} = "prot=$peg&uni=1&user=master:cached";
	    @tmp = `$FIG_Config::fig/CGI/chromosomal_clusters.cgi`;
	    $tmp = join("",`cat '$FIG_Config::temp/Cache/$peg:1'`);
	    if ($tmp =~ /(GenoGraphics_\d+\.\d+\.jpg)/s)
	    {
		$old = $1;
		$new = "GGcache.$peg.jpg";
		$tmp =~ s/$old/$new/s;
		open(TMP,">$dir/Cache/$peg:1") || die "could not open $dir/Cache/$peg:1";
		print TMP $tmp;
		close(TMP);
		system "cp '$FIG_Config::temp/Save/$old' '$dir/Save/$new'";
		unlink("$FIG_Config::temp/Cache/$peg:1");
		unlink("$FIG_Config::temp/Save/$old");
	    }
	}
    }
}


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