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Revision 1.1 - (download) (as text) (annotate)
Fri Dec 1 23:22:45 2006 UTC (13 years, 2 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
add GO attribute genertation

use FIG;
my $fig = new FIG;

foreach $subsys (grep { $fig->usable_subsystem($_) } $fig->all_subsystems)
{
    @roles    = $fig->subsystem_to_roles($subsys);
    foreach $role (@roles)
    {
	if (! $togo{$role})
	{
	    @tmp = $fig->fr_to_go($role);
	    if (@tmp > 0)
	    {
		$togo{$role} = [@tmp];
	    }
	}
    }
}

foreach $role (sort keys(%togo))
{
    $x = $togo{$role};
    
    foreach $peg ($fig->role_to_pegs($role))
    {
	foreach $go (@$x)
	{
	    my $url = "http://www.godatabase.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=" . $go;
	    $desc = $fig->go_number_to_term($go);
	    print join("\t",($peg,"GO","$go $desc",$url)),"\n";
	}
    }
}

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