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1 : olson 1.4 #
2 :     # Copyright (c) 2003-2006 University of Chicago and Fellowship
3 :     # for Interpretations of Genomes. All Rights Reserved.
4 :     #
5 :     # This file is part of the SEED Toolkit.
6 :     #
7 :     # The SEED Toolkit is free software. You can redistribute
8 :     # it and/or modify it under the terms of the SEED Toolkit
9 :     # Public License.
10 :     #
11 :     # You should have received a copy of the SEED Toolkit Public License
12 :     # along with this program; if not write to the University of Chicago
13 :     # at info@ci.uchicago.edu or the Fellowship for Interpretation of
14 :     # Genomes at veronika@thefig.info or download a copy from
15 :     # http://www.theseed.org/LICENSE.TXT.
16 :     #
17 :    
18 : overbeek 1.1 use FIG;
19 :     my $fig = new FIG;
20 :    
21 : overbeek 1.5 # usage: function_of PEG > PEG-FUNCTION
22 : overbeek 1.1
23 : overbeek 1.3 $genome = (@ARGV > 0) ? $ARGV[0] : "";
24 :    
25 : overbeek 1.5 while (defined($x = <STDIN>))
26 : overbeek 1.1 {
27 : overbeek 1.5 chomp $x;
28 :     if ($x =~ /(fig\|\d+\.\d+\.peg\.\d+)$/)
29 : overbeek 1.1 {
30 :     $peg = $1;
31 : overbeek 1.5 $func = $fig->function_of($peg);
32 :     print join("\t",$x,$func),"\n";
33 : overbeek 1.1 }
34 :     }

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