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Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 6 01:41:57 2007 UTC (11 years, 11 months ago) by golsen
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.3: +18 -2 lines
Diff to previous 1.3
Add functions to reference selenoproteins, and add change the set
slightly.  Report function of best matching protein.  Optionally
report the id of the best matching protein.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 23 00:33:31 2007 UTC (11 years, 11 months ago) by golsen
Branch: MAIN
Changes since 1.2: +11 -7 lines
Diff to previous 1.2
Add support for pyrrolysyl proteins.  Also, major revision and clean-up
of the translation utilities in gjoseqlib.pm.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 21 23:59:16 2007 UTC (12 years ago) by golsen
Branch: MAIN
Changes since 1.1: +31 -11 lines
Diff to previous 1.1
Add flags to allow user control over temporary file locations.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 21 23:15:59 2007 UTC (12 years ago) by golsen
Branch: MAIN
Add a command line tool for finding selenoproteins, and update the library
to support its options.  Most interestingly, the reference sequences are
now bundled in a perl module and used my default.

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