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Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 5 19:45:28 2009 UTC (10 years, 1 month ago) by olson
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.10: +3 -2 lines
Diff to previous 1.10
Switch to FFs and FF instead of FigFams and FigFam

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 7 22:29:05 2009 UTC (10 years, 5 months ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2009_07_09, rast_rel_2009_0925
Changes since 1.9: +45 -31 lines
Diff to previous 1.9
Major rewrite to prevent already-found PEGs from being re-called by every stage of RAST.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 15 23:29:42 2009 UTC (10 years, 6 months ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2009_05_18
Changes since 1.8: +12 -5 lines
Diff to previous 1.8
Added some bulletproofing for "keep_original_calls" mode, plus some minor cosmetic changes.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 13 23:04:18 2008 UTC (11 years, 9 months ago) by gdpusch
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_release_2008_09_29
Changes since 1.7: +24 -16 lines
Diff to previous 1.7
Added comments, divide-by-zero protection, and removed an ill-thought-out hand-optimization that was writing duplicate FIDs to the "called_by" file. -- /gdp

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 13 14:54:27 2008 UTC (11 years, 9 months ago) by gdpusch
Branch: MAIN
Changes since 1.6: +17 -4 lines
Diff to previous 1.6
Final clean-up. -- /gdp

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 31 15:31:39 2008 UTC (11 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.5: +3 -5 lines
Diff to previous 1.5
Put reporting of family directory used in the FigFams constructor, only printed if REPORT_FIGFAM_DETAILS
is specified in the environment.

Make the FIG_Config defaulting work properly for the figfams directory.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 30 22:50:37 2008 UTC (11 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.4: +2 -0 lines
Diff to previous 1.4
Log the pathname to the figfams directory used for the analysis.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 7 22:19:15 2007 UTC (12 years ago) by gdpusch
Branch: MAIN
Changes since 1.3: +1 -1 lines
Diff to previous 1.3
Reconciled the normalization used by both "find_neighbors" scripts. -- /gdp

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 14 18:10:21 2007 UTC (12 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +14 -2 lines
Diff to previous 1.2
fixes to ToCal.pm

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 1 04:19:16 2007 UTC (12 years, 6 months ago) by gdpusch
Branch: MAIN
Changes since 1.1: +29 -11 lines
Diff to previous 1.1
Fixed various bugs in initial version. -- /gdp

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 1 02:14:30 2007 UTC (12 years, 6 months ago) by gdpusch
Branch: MAIN
Find neighbors using long non-universal proteins. -- /gdp

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