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Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 4 03:08:27 2010 UTC (9 years, 4 months ago) by olson
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.9: +8 -5 lines
Diff to previous 1.9
more RAST fixes (some of these may need to be backported to use the SAP version
outside rast, but the immediate need is for the rast version)

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 3 20:42:53 2010 UTC (9 years, 4 months ago) by olson
Branch: MAIN
Changes since 1.8: +18 -4 lines
Diff to previous 1.8
Use FIGV to get nonreference genome info in rast.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 16 14:58:13 2010 UTC (9 years, 4 months ago) by gdpusch
Branch: MAIN
Changes since 1.7: +3 -2 lines
Diff to previous 1.7
Changed file check to whether correspondence table exists, not has nonzero size; correct typo that was returning $func instead of $len.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 12 00:15:47 2010 UTC (9 years, 8 months ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2010_0526
Changes since 1.6: +4 -3 lines
Diff to previous 1.6
Added check to only accept BBHs from corresponding genes table.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 1 23:02:15 2010 UTC (9 years, 8 months ago) by gdpusch
Branch: MAIN
Changes since 1.5: +53 -11 lines
Diff to previous 1.5
Fixed serious bug in gap computation.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 4 17:14:57 2010 UTC (9 years, 9 months ago) by gdpusch
Branch: MAIN
Changes since 1.4: +1 -1 lines
Diff to previous 1.4
Minor cosmetic changes.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 2 21:35:58 2010 UTC (9 years, 9 months ago) by gdpusch
Branch: MAIN
Changes since 1.3: +7 -4 lines
Diff to previous 1.3
Minor changes to ouput and error formats.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 2 20:21:59 2010 UTC (9 years, 9 months ago) by gdpusch
Branch: MAIN
Changes since 1.2: +33 -55 lines
Diff to previous 1.2
Changed output to key/value format; removed HTML output and most output to STDERR unless $ENV{VERBOSE}=1

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 2 18:08:47 2010 UTC (9 years, 9 months ago) by gdpusch
Branch: MAIN
Changes since 1.1: +3 -3 lines
Diff to previous 1.1
Minor fixes.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 2 13:27:06 2010 UTC (9 years, 9 months ago) by gdpusch
Branch: MAIN
Initial checkin.

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