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Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Sep 14 04:26:47 2019 UTC (8 weeks, 3 days ago) by gdpusch
Branch: MAIN
CVS Tags: HEAD
Changes since 1.8: +13 -3 lines
Diff to previous 1.8
Added some code to ensure that this tool only returns genomes that are installed in the current SEED

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Oct 2 18:01:50 2018 UTC (13 months, 1 week ago) by gdpusch
Branch: MAIN
Changes since 1.7: +70 -34 lines
Diff to previous 1.7
Conversions from SAPserver FIGfams to direct FIG.pm access to PATtyFams. (Removed "SAS Serve" tag)

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 8 20:52:10 2011 UTC (8 years, 3 months ago) by gdpusch
Branch: MAIN
CVS Tags: mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_1_2, mgrast_version_3_2, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.6: +10 -0 lines
Diff to previous 1.6
Added debugging info on number and types of conserved proetins found.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 16 19:43:18 2011 UTC (8 years, 9 months ago) by gdpusch
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, myrast_33, myrast_rel40, rast_rel_2011_0119
Changes since 1.5: +2 -2 lines
Diff to previous 1.5
Modified to look for "proposed_functions" and "proposed_non_ff_functions" as well as "assigned_functions."

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 16 19:23:45 2011 UTC (8 years, 9 months ago) by gdpusch
Branch: MAIN
Changes since 1.4: +34 -10 lines
Diff to previous 1.4
Modified to look for "proposed_functions" and "proposed_non_ff_functions" as well as "assigned_functions."

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Nov 28 15:36:20 2010 UTC (8 years, 11 months ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2010_1206
Changes since 1.3: +11 -9 lines
Diff to previous 1.3
Removed "-nofatal" option; code now always exists gracefully if there are no assigned functions.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 23 18:16:03 2010 UTC (8 years, 11 months ago) by gdpusch
Branch: MAIN
Changes since 1.2: +60 -44 lines
Diff to previous 1.2
Modified to fail gracefully if there are too few RAST-called functions.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 23 23:26:52 2010 UTC (9 years, 2 months ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2010_0827, rast_rel_2010_0928
Changes since 1.1: +16 -7 lines
Diff to previous 1.1
Allow use of "orf" features, in addition to "peg" features.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 21 21:20:31 2010 UTC (9 years, 7 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2010_0526
find neighbors based on assigned functions and blast

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