[Bio] / FigKernelScripts / find_SEED_SSU_rRNA_genes.pl Repository:
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revision 1.5, Wed Aug 15 16:45:14 2012 UTC revision 1.6, Mon Aug 27 21:41:48 2012 UTC
# Line 55  Line 55 
55  my @rna;  my @rna;
56    
57  use SSU_rRNA_reps;  use SSU_rRNA_reps;
58  @rna        = @SSU_rRNA_reps::RNA_reps;  @rna        = @RNA_reps::RNA_reps;
59  $assignment = $SSU_rRNA_reps::assignment if $SSU_rRNA_reps::assignment;  $assignment = $RNA_reps::assignment if $RNA_reps::assignment;
60  $tag        = $SSU_rRNA_reps::tag        if $SSU_rRNA_reps::tag;  $tag        = $RNA_reps::tag        if $RNA_reps::tag;
61    
62  ensure_defined( $extrapolate, 10 );  ensure_defined( $extrapolate, 10 );
63  ensure_defined( $assignment, 'SSU rRNA ## 16S rRNA, small subunit ribosomal RNA' );  ensure_defined( $assignment, 'SSU rRNA ## 16S rRNA, small subunit ribosomal RNA' );

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