[Bio] / FigKernelScripts / find_SEED_SSU_rRNA_genes.pl Repository:
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revision 1.1, Sat Feb 21 15:20:35 2009 UTC revision 1.2, Sat Feb 21 15:37:22 2009 UTC
# Line 21  Line 21 
21    
22  foreach my $genome ( @genomes )  foreach my $genome ( @genomes )
23  {  {
24      my $contig_file = "Organisms/$genome/contigs";      my $contig_file = "$FIG_Config::organisms/$genome/contigs";
25      -f $contig_file or print STDERR "Could not find contig file $contig_file\n"      -f $contig_file or print STDERR "Could not find contig file $contig_file\n"
26                      and exit;                      and exit;
27      my $options = { description => 'Small subunit ribosomal RNA',      my $options = { description => 'Small subunit ribosomal RNA',

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