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Revision 1.5 - (download) (as text) (annotate)
Mon Dec 5 18:56:37 2005 UTC (14 years ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, caBIG-05Apr06-00, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, caBIG-13Feb06-00, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.4: +17 -0 lines
Add license words.

#
# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
#

#
# XMLRPC server to provide network access to FIG routines.
#
# We create a single FIG instance to use for all calls.
#
# This is originally intended for the support of the Python interface.
#

my @util_funcs = qw(
	enqueue_similarities
	plug_url
	min
	max
	between
	translate
	reverse_comp
	rev_comp
	verify_dir
	run
	read_fasta_record
	display_id_and_seq
	display_seq
	abbrev
	ftype
	by_fig_id
	close_enough
	extract_by_who
	read_block
	blastit
	epoch_to_readable
	auto_assign
	roles_of_function
	close_enough_locs
	extract_seq
	limit_labels
	taxonomic_groups
	taxonomic_groups_and_children
);

my(%util_funcs);

grep({$util_funcs{$_}++} @util_funcs);

use strict;

no strict 'refs';

use FIG;


require XMLRPC::Transport::HTTP;
require XMLRPC::Lite;
use IO::Select;
use IO::Handle;

my $server = XMLRPC::Transport::HTTP::Daemon->new(LocalAddr =>"127.0.0.1",
						  ReuseAddr => 1);
my $fig = new FIG;

my @d = ();

sub wrap_util
{
    my($name) = @_;

    my $sub = sub {
	shift if UNIVERSAL::isa($_[0] => __PACKAGE__);
	print "Args: ", map { "<$_>\n" } @_ , "\n";
	print "name $name\n";
	my @ret = eval " &FIG::$name(\@_);";
	print "Ret: @ret\n";
	return map { ref($_) ? $_ : XMLRPC::Data->type("string", $_) } @ret;

    };

    return $sub;
}

sub wrap_method
{
    my($name, $fig) = @_;
    my $sub = sub {
	shift if UNIVERSAL::isa($_[0] => __PACKAGE__);
	print "Args: ", map { "<$_>\n" } @_ , "\n";
	print "name $name\n";
	my @ret = $fig->$name(@_);
	print "Ret: @ret\n";
	return map { ref($_) ? $_ : XMLRPC::Data->type("string", $_) } @ret;

    };

    return $sub;
}

for my $name (keys(%FIG::))
{
    next if $name !~ /^[a-zA-Z]/;
    next if $name eq "new";

    my $glob = $FIG::{$name};

    next unless defined(&$glob);
 
    my $methName = $name;

    if ($util_funcs{$name})
    {
	*$methName = wrap_util($name);
    }
    else
    {
	*$methName = wrap_method($name, $fig);
    }    

    push(@d, $methName);
}

sub genomes
{
    my($dummy) = @_;

    my(@ret);

    @ret = $fig->genomes();

    return force_to_strings(@ret);
}


sub genus_species
{
    my($dummy, $genome) = @_;

    my($ret);

    $ret = $fig->genus_species($genome);

    return force_to_string($ret);
}


$server->dispatch_to(@d);
#$server->dispatch_to('XMLPKG');

print $server->url, "\n";
STDOUT->autoflush();

# $server->handle;

my $s = $server->new();
my $sel = IO::Select->new();
$sel->add($s->{_daemon});
my $stdin = \*STDIN;
$sel->add($stdin);
while (1)
{
    my @ready = $sel->can_read();
    for my $fh (@ready)
    {
	if ($fh == $s->{_daemon})
	{
	    my $c = $s->accept;
	    while (my $r = $c->get_request)
	    {
		$s->request($r);
		$s->SOAP::Transport::HTTP::Server::handle;
		$c->send_response($s->response);
	    }
	}
	elsif ($fh == $stdin)
	{
	    my $buf;
	    my $n = sysread($stdin, $buf, 1);
	    if ($n == 0)
	    {
		print "Exiting due to closed stdin\n";
		$sel->remove($stdin);
		exit;
	    }
	}
    }
}



    

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