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Revision 1.1 - (download) (as text) (annotate)
Tue Jan 25 22:05:23 2011 UTC (9 years, 2 months ago) by fangfang
Branch: MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, rast_rel_2014_0912, myrast_rel40, mgrast_dev_05262011, mgrast_dev_04082011, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, rast_rel_2014_0729, mgrast_dev_02212011, mgrast_release_3_0, mgrast_dev_03252011, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, myrast_33, rast_rel_2011_0928, mgrast_dev_04052011, mgrast_dev_02222011, mgrast_dev_10262011, HEAD
initial import

use strict;

use FIGMODEL;
use Data::Dumper;

my $usage = "Usage: fetch_models_for_genomes < genome_id_list > model_id_list";

my $figmodel = FIGMODEL->new();

my @gids = map { /(\d+\.\d+)/ ? $1 : () } @ARGV;
@gids > 0 or @gids = ( join(" ", <STDIN>) =~ m/(\d+\.\d+)/g );

my @all_models;

foreach my $gid (@gids) {
    my $models = $figmodel->database()->get_objects("model", { genome => $gid });
    next unless $models && @$models > 0;
    my @seed_models = map { $_->source() eq 'SEED' ? $_->id() : () } @$models;
    push @all_models, @seed_models if @seed_models;
}

print join("\n", @all_models) . "\n";

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