[Bio] / FigKernelScripts / extract_data_for_syncing_after_update.pl Repository:
ViewVC logotype

View of /FigKernelScripts/extract_data_for_syncing_after_update.pl

Parent Directory Parent Directory | Revision Log Revision Log


Revision 1.6 - (download) (as text) (annotate)
Mon Dec 5 18:56:37 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, caBIG-05Apr06-00, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, caBIG-13Feb06-00, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.5: +17 -0 lines
Add license words.

#
# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
#

use P2Pupdate;

use FIG;
my $fig = new FIG;

( 
 ($sync_from_date      = shift @ARGV) &&
  ($dir                = shift @ARGV)
)
    || die "usage: usage: extract_data_for_syncing_after_update SyncFromDate(MM/DD/YYYY) Dir";
(! -d $dir) || die "$dir already exists";
mkdir($dir,0777) || die "could not make $dir";
$assignments_package  = "$dir/assignments_package";
$annotations_package  = "$dir/annotations_package";
$trans_rules_package  = "$dir/trans_rules_package";
$subsys_package       = "$dir/subsys_package";

&P2Pupdate::package_translation_rules($FIG_Config::fig,$trans_rules_package);
&P2Pupdate::package_subsystems($fig,$subsys_package,0);

my(@genomes) = $fig->genomes;
&P2Pupdate::package_assignments($fig,"master","master",$sync_from_date,\@genomes,$assignments_package);
&P2Pupdate::package_annotations($fig,"master",$sync_from_date,\@genomes,$annotations_package);


MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3