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Revision 1.3 - (download) (as text) (annotate)
Mon Dec 5 18:56:37 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, caBIG-05Apr06-00, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, caBIG-13Feb06-00, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.2: +17 -0 lines
Add license words.

#
# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
#


# usage: expand_multifunctional_roles < filled_in > expanded.filled.in

$/ = "\n//\n";
$_ = <STDIN>;
$_ =~ s/^[^\n]+\n//s;
print $_;

($roles = <STDIN>) || die "bad input file";
chomp $roles;
@roles = map { $_ =~ /^(\S+)\t(\S.*\S)/; [$1,$2] } split(/\n/,$roles);
$/ = "\n";

$i = 0;
foreach $tuple (@roles)
{
    ($abbr,$role) = @$tuple;
    @to = split(/ [\@\/] |;\s+/,$role);
    $expand{$i} = scalar @to;
    $i++;
    if (@to > 1)
    {
	$expand{$i} = [@to];
	$suff  = "a";
	$abbrE = $abbr . $suff;
	foreach $subrole (@to)
	{
	    print "$abbrE\t$subrole\n";
	    $suff++;
	    $abbrE = $abbr . $suff;
	}
    }
    else
    {
	print "$abbr\t$role\n";
    }
}
print "//\n";

while (defined($_ = <STDIN>) && ($_ !~ /^\/\//))
{
    chop;
    @flds = split(/\t/,$_);
    print join("\t",($flds[0],$flds[1]));

    for ($i=2; ($i < @flds); $i++)
    {
	for ($j=0; ($j < $expand{$i-2}); $j++)
	{
	    print "\t$flds[$i]";
	}
    }
    print "\n";
}
print "//\n";

	
    

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