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1 : olson 1.3 #
2 : golsen 1.4 # Copyright (c) 2003-2008 University of Chicago and Fellowship
3 : olson 1.3 # for Interpretations of Genomes. All Rights Reserved.
4 :     #
5 :     # This file is part of the SEED Toolkit.
6 :     #
7 :     # The SEED Toolkit is free software. You can redistribute
8 :     # it and/or modify it under the terms of the SEED Toolkit
9 :     # Public License.
10 :     #
11 :     # You should have received a copy of the SEED Toolkit Public License
12 :     # along with this program; if not write to the University of Chicago
13 :     # at info@ci.uchicago.edu or the Fellowship for Interpretation of
14 :     # Genomes at veronika@thefig.info or download a copy from
15 :     # http://www.theseed.org/LICENSE.TXT.
16 :     #
17 :    
18 : overbeek 1.1 use FIG;
19 :     my $fig = new FIG;
20 :    
21 : overbeek 1.5 (
22 :     ($user = shift @ARGV) &&
23 :     ($annot = shift @ARGV)
24 :     )
25 :     || die "conditionally_assign User Annotation";
26 : overbeek 1.1
27 :     while ($_ = <STDIN>)
28 :     {
29 : golsen 1.4 chomp;
30 : overbeek 1.5 my( $peg, $old, $new ) = split(/\t/,$_);
31 : golsen 1.4 if ( $peg && $new && $old eq $fig->function_of( $peg ) )
32 : overbeek 1.1 {
33 : golsen 1.4 $fig->assign_function( $peg, $user, $new, "" );
34 : overbeek 1.5 $fig->add_annotation($peg,$user,$annot);
35 : overbeek 1.1 }
36 :     }

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