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Revision 1.5 - (view) (download) (as text)
| 1 : | olson | 1.3 | # |
| 2 : | golsen | 1.4 | # Copyright (c) 2003-2008 University of Chicago and Fellowship |
| 3 : | olson | 1.3 | # for Interpretations of Genomes. All Rights Reserved. |
| 4 : | # | ||
| 5 : | # This file is part of the SEED Toolkit. | ||
| 6 : | # | ||
| 7 : | # The SEED Toolkit is free software. You can redistribute | ||
| 8 : | # it and/or modify it under the terms of the SEED Toolkit | ||
| 9 : | # Public License. | ||
| 10 : | # | ||
| 11 : | # You should have received a copy of the SEED Toolkit Public License | ||
| 12 : | # along with this program; if not write to the University of Chicago | ||
| 13 : | # at info@ci.uchicago.edu or the Fellowship for Interpretation of | ||
| 14 : | # Genomes at veronika@thefig.info or download a copy from | ||
| 15 : | # http://www.theseed.org/LICENSE.TXT. | ||
| 16 : | # | ||
| 17 : | |||
| 18 : | overbeek | 1.1 | use FIG; |
| 19 : | my $fig = new FIG; | ||
| 20 : | |||
| 21 : | overbeek | 1.5 | ( |
| 22 : | ($user = shift @ARGV) && | ||
| 23 : | ($annot = shift @ARGV) | ||
| 24 : | ) | ||
| 25 : | || die "conditionally_assign User Annotation"; | ||
| 26 : | overbeek | 1.1 | |
| 27 : | while ($_ = <STDIN>) | ||
| 28 : | { | ||
| 29 : | golsen | 1.4 | chomp; |
| 30 : | overbeek | 1.5 | my( $peg, $old, $new ) = split(/\t/,$_); |
| 31 : | golsen | 1.4 | if ( $peg && $new && $old eq $fig->function_of( $peg ) ) |
| 32 : | overbeek | 1.1 | { |
| 33 : | golsen | 1.4 | $fig->assign_function( $peg, $user, $new, "" ); |
| 34 : | overbeek | 1.5 | $fig->add_annotation($peg,$user,$annot); |
| 35 : | overbeek | 1.1 | } |
| 36 : | } |
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