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1 : olson 1.4 #
2 :     # Copyright (c) 2003-2006 University of Chicago and Fellowship
3 :     # for Interpretations of Genomes. All Rights Reserved.
4 :     #
5 :     # This file is part of the SEED Toolkit.
6 :     #
7 :     # The SEED Toolkit is free software. You can redistribute
8 :     # it and/or modify it under the terms of the SEED Toolkit
9 :     # Public License.
10 :     #
11 :     # You should have received a copy of the SEED Toolkit Public License
12 :     # along with this program; if not write to the University of Chicago
13 :     # at info@ci.uchicago.edu or the Fellowship for Interpretation of
14 :     # Genomes at veronika@thefig.info or download a copy from
15 :     # http://www.theseed.org/LICENSE.TXT.
16 :     #
17 :    
18 : overbeek 1.1
19 :     $usage = "usage: compute_simple_scores MinSc < filtered.pchs > scored";
20 :     ($minsc = shift @ARGV)
21 :     || die $usage;
22 :    
23 : overbeek 1.3 while (defined($_ = <STDIN>) && ($_ =~ /\t0$/)) {}
24 : overbeek 1.1 while ($_ && ($_ =~ /^(\S+\t\S+)/))
25 :     {
26 :     $curr = $1;
27 :     $n = 0;
28 :     while ($_ && ($_ =~ /^(\S+\t\S+)/) && ($1 eq $curr))
29 :     {
30 :     $n++;
31 : overbeek 1.3 while (defined($_ = <STDIN>) && ($_ =~ /\t0$/)) {}
32 : overbeek 1.1 }
33 :    
34 :     if ($n >= $minsc)
35 :     {
36 :     print "$curr\t$n\n";
37 :     }
38 :     }

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