[Bio] / FigKernelScripts / compute_ev_code_attributes.pl Repository:
ViewVC logotype

View of /FigKernelScripts/compute_ev_code_attributes.pl

Parent Directory Parent Directory | Revision Log Revision Log

Revision 1.2 - (download) (as text) (annotate)
Sat May 3 02:30:30 2008 UTC (12 years, 2 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.1: +1 -1 lines
do not include cluster-based subsystems in forming evidence codes



=head1 compute_ev_code_attributes

A wrapper to recalculate the evidence codes. This should allow you to redo all the evidence codes daily, weekly or whatever.

=head2 author

RobE RobE@theFIG.info & Robert Olson, olson@mcs.anl.gov


use strict;
use FIG;
my $fig = new FIG;
use constant DEBUG=>1;

# recalculate the evidence codes

# at the moment we are building evidence codes for all subsystems that are not experimental
# using the fig->trusted_subsystems code

my $subsys_file = "$FIG_Config::temp/all_subsys.$$";

print STDERR "Finding the subsystems\n" if (DEBUG);
open(OUT, ">$subsys_file") || die "Can't write to $subsys_file: $!";
foreach my $ss ($fig->all_subsystems)
    next unless ($fig->usable_subsystem($ss,1));  # do not use cluster-based subsystems for evidence codes
    print OUT "$ss\n";
close OUT;

# just use the existing code to do this
my @command = ($FIG_Config::bin."/get_ev_codes", $subsys_file);

print STDERR "Running the evidence code command @command\n" if (DEBUG);
my $rc = system(@command);

if ($rc != 0)
    my($stat, $sig, $msg) = &FIG::interpret_error_code($rc);
    die "$msg: @command";

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3