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Revision 1.1 - (download) (as text) (annotate)
Sun Mar 11 20:37:54 2007 UTC (12 years, 8 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
basic stuff for comparing metabolic reconstructions

########################################################################

use CompareMR;

my $usage = "usage: compare_subs GenomeOrDirectory Genome > comparison";

(
 ($arg1    = shift @ARGV) &&
 ($genome2 = shift @ARGV) && (-d "$FIG_Config::organisms/$genome2")
)
    || die $usage;

my($common,$in1_not2,$in2_not1) = &CompareMR::compare_genomes_MR($arg1,$genome2);
	
my $tuple;
foreach $tuple (@$common)
{
    my($sub,$role,$pegs1,$pegs2) = @$tuple;
    print join("\t",($sub,$role,join(",",@$pegs1),join(",",@$pegs2))),"\n";
}
print "//\n";

foreach $tuple (@$in1_not2)
{
    my($sub,$role,$pegs) = @$tuple;
    print join("\t",($sub,$role,join(",",@$pegs))),"\n";
}
print "//\n";

foreach $tuple (@$in2_not1)
{
    my($sub,$role,$pegs) = @$tuple;
    print join("\t",($sub,$role,join(",",@$pegs))),"\n";
}
print "//\n";


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