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Revision 1.1 - (download) (as text) (annotate)
Sun Apr 20 13:00:15 2008 UTC (11 years, 7 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
return empty list of failure to open FIFfam

use FIG;
my $fig = new FIG;

# usage: build_partition_index [FigfamsData]

($ffD = shift @ARGV)
    || ($ffD = "$FIG_Config::data/FigfamsData");

open(OUT,">$ffD/partition.index") || die "could not open $ffD/partition.index";

for ($i=0; ($i < 1000); $i++)
{
    if (opendir(PARTS,"$ffD/Partitions/$i"))
    {
	@subD = sort { $a <=> $b } grep { $_ =~ /^\d+$/ } readdir(PARTS);
	closedir(PARTS);
	foreach $j (@subD)
	{
	    @pegs = map { $_ =~ /^>(fig\|\d+\.\d+\.peg\.\d+)/ } `grep \"^>\" $ffD/Partitions/$i/$j/fasta`;
	    foreach $peg (@pegs)
	    {
		print OUT "$j\t$peg\n";
	    }
	}
    }
}

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