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revision 1.4, Mon Dec 5 18:56:37 2005 UTC revision 1.5, Fri Apr 3 20:02:44 2009 UTC
# Line 26  Line 26 
26    
27  # usage: blastp_pseq MinGood [Db] < pseq > table_of_hits  # usage: blastp_pseq MinGood [Db] < pseq > table_of_hits
28    
29  (($cutoff = shift @ARGV) && ($db     = shift @ARGV))  (($cutoff = shift @ARGV) && ($db     = shift @ARGV || "$FIG_Config::global/nr-std"))
30      || die "usage: blastp_pseq MinGood [Db] < pseq > table_of_hits";      || die "usage: blastp_pseq MinGood [Db] < pseq > table_of_hits";
31    
32  $tmp = "$FIG_Config::temp/tmp$$";  $tmp = "$FIG_Config::temp/tmp$$";
# Line 37  Line 37 
37  }  }
38  close(TMP);  close(TMP);
39    
40    print STDERR "Blasting against $db\n";
41    
42  $ENV{"BLASTMAT"} = $FIG_Config::blastmat;  $ENV{"BLASTMAT"} = $FIG_Config::blastmat;
43  if (! -s "$db.psq")  if (! -s "$db.psq")
44  {  {

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